Gerber, B. R. ; Sebek, J. Dynamics simulations of atmospherically relevant molecular reactions.
INTERNATIONAL REVIEWS IN PHYSICAL CHEMISTRY 2009,
28, 207-222.
AbstractThis article offers an overview of the recent progress in theoretical modelling of molecular reactions of atmospheric interest. The review covers processes in isolated molecules, e. g. vibrational overtone-induced processes in HNO(3) and H(2)SO(4). Another focal topic is thermally, as well as overtone-induced processes of NO(x), HNO(x) and other atmospherically relevant species in water clusters, the latter serving as models for water surfaces, aerosols and other water environments. Among the processes examined in water clusters are separations of NO(x) and HNO(x) into ion pairs in contact with water, and the reverse processes of anion/cation recombination to form neutral molecules. Physical insights into the mechanisms and properties of the processes, as extracted from theoretical simulations, are analysed. The methodology discussed in the review is mostly classical molecular dynamics simulations, using potentials directly from electronic structure methods. The merits and limitations of different electronic structure methods for the systems of interest are discussed. Limitations and open problems with regard to the classical dynamics approximation are also briefly examined. Concluding remarks are presented on the usefulness of classical dynamics with ab initio potentials for reactions of atmospheric chemistry. Possible directions for future progress are suggested.
Khriachtchev, L. ; Raesaenen, M. ; Gerber, B. R. Noble-Gas Hydrides: New Chemistry at Low Temperatures.
ACCOUNTS OF CHEMICAL RESEARCH 2009,
42, 183-191.
AbstractNoble-gas chemistry has been undergoing a renaissance in recent years, due in large part to noble-gas hydrides, HNgY, where Ng noble-gas atom and Y = electronegative fragment. These molecules are exceptional because of their relatively weak bonding and large dipole moments, which lead to strongly enhanced effects of the environment, complexation, and reactions. In this Account, we discuss the matrix-isolation synthesis of noble-gas hydrides, their spectroscopic and structural properties, and their stabilities. This family of species was discovered in 1995 and now has 23 members that are prepared in noble-gas matrices (HXeBr, HKrCl, HXeH, HXeOH, HXeO, etc.). The preparations of the first neutral argon molecule, HArF, and halogen-free organic noble-gas molecules (HXeCCH, HXeCC, HKrCCH, etc.) are important highlights of the field. These molecules are formed by the neutral H + Ng + Y channel. The first addition reaction involving HNgY molecules was HXeCC + Xe + H -> HXeCCXeH, and this led to the first hydride with two noble-gas atoms (recently extended by HXeOXeH). The experimental synthesis of HNgY molecules starts with production of H and Y fragments in solid noble gas via the UV photolysis of suitable precursors. The HNgY molecules mainly form upon thermal mobilization of the fragments. One of the unusual properties of these molecules is the hindered rotation of some HNgY molecules in solid matrices; this has been theoretically modeled. HNgY molecules also have unusual solvation effects, and the H-Xe stretching mode shifts to higher frequencies (up to about 150 cm(-1)) upon interaction with other species. The noble hydrides have a new bonding motif: HNgY molecules can be represented in the form (H-Ng)(+)Y(-), where (H-Ng)+ is mainly covalent, whereas the interaction between (HNg)(+) and Y(-) is predominantly ionic. The HNgY molecules are highly metastable species representing high-energy materials. The decomposition process HNgY -> Ng + HY is always strongly exoergic; however, the decomposition is prevented by high barriers, for instance, about 2 eV for HXeCCH. The other decomposition channel HNgY - H + Ng + Y is endothermic for all prepared molecules. Areas that appear promising for further study include the extension of argon chemistry, preparation of new bonds with noble-gas atoms (such as Xe-Si bond), and studies of radon compounds. The calculations suggest the existence of related polymers, aggregates, and even HNgY crystals, and their experimental preparation is a major challenge. Another interesting task, still in its early stages, is the preparation of HNgY molecules in the gas phase.
Sukharev, M. ; Cohen, A. ; Gerber, R. B. ; Seideman, T. Ultrafast nonadiabatic photodissociation dynamics of F-2 in solid Ar.
LASER PHYSICS 2009,
19, 1651-1659.
AbstractWe explore the ultrafast spin-flip dynamics in a diatomic molecule imbedded in a rare gas matrix using the combination of a quantum mechanical and a semiclassical surface hopping method. Specifically, we investigate (1) the extent to which the phenomenon of electronically-localized eigenstates in strongly-coupled manifolds survives in the presence of rapid decay and a multitude of electronically coupled states; (2) the ability of the surface hopping method to predict the short time dynamics; and (3) the time range over which frozen lattice models are valid. Our results point to the active role played by a large number of coupled electronic states in the F-2/Ar dynamics while substantiating our confidence in the validity of the popular surface hopping approach for the system considered.
Link, O. ; Voehringer-Martinez, E. ; Lugovoj, E. ; Liu, Y. ; Siefermann, K. ; Faubel, M. ; Grubmueller, H. ; Gerber, B. R. ; Miller, Y. ; Abel, B. Ultrafast phase transitions in metastable water near liquid interfaces.
FARADAY DISCUSSIONS 2009,
141, 67-79.
AbstractElectron spectroscopy for chemical analysis (ESCA) is a powerful tool for the quantitative analysis of the composition and the chemical environment of molecular systems. Due to the lack of compatibiltiy of liquids and vacuum, liquid-phase ESCA is much less well established. The chemical shift in the static ESCA approach is a particularly powerful observable quantity for probing electron orbital energies in molecules in different molecular environments. Employing high harmonics of 800nm (40 eV). near-infrared femtosecond pulses and liquid-water microbeams in vacuum we were able to add the dimension of time to the liquid interface ESCA technique. Tracing time-dependent chemical shifts and energies of valence electrons in liquid interfacial water in time, we have investigated the timescale and molecular signatures of laser-induced liquid-gas phase transitions on a picosecond timescale.
Feldman, V. I. ; Kobzarenko, A. V. ; Baranova, I. A. ; Danchenko, A. V. ; Sukhov, F. F. ; Tsivion, E. ; Gerber, B. R. Direct visualization of the H-Xe bond in xenon hydrides: Xenon isotopic shift in the IR spectra.
JOURNAL OF CHEMICAL PHYSICS 2009,
131.
AbstractIR spectra of xenon hydrides (HXeCCH, HXeCC, and HXeH) obtained from different xenon isotopes ((129)Xe and (136)Xe) exhibit a small but detectable and reproducible isotopic shift in the absorptions assigned to H-Xe stretching (by 0.17-0.38 cm(-1)). To our knowledge, it is the first direct experimental evidence for the H-Xe bond in HXeY type compounds. The shift magnitude is in good agreement with quantum-chemical calculations. (C) 2009 American Institute of Physics. [doi: 10.1063/1.3250426]
Miller, Y. ; Finlayson-Pitts, B. J. ; Gerber, B. R. Ionization of N2O4 in Contact with Water: Mechanism, Time Scales and Atmospheric Implications.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 2009,
131, 12180-12185.
AbstractIonization of N2O4 in and on thin water films on surfaces is believed to be a key step in the hydrolysis of NO2 which generates HONO, a significant precursor to the OH free radical in the lower atmosphere. Molecular dynamics simulations using ``on the fly'' high-level MP2 potentials are carried out for ONONO2 center dot(H2O)(n) clusters, n <= 8, used to mimic the surface reaction, in order to investigate the ionization process and determine its time-scale and mechanism around room temperature. The results are (i) the isolated molecule does not convert to the NO(+)NO3(-) ion pair, even for long times; (ii) for ONONO2 center dot(H2O)(n) with n = 1 and 2, ionization takes place in several picoseconds; (iii) for n >= 3, ionization is essentially immediate, implying that the neutral species does not have sufficient lifetime to be considered a significant intermediate in the reaction; and (iv) even at ice temperatures, T <= 250 K, ionization for n >= 3 is immediate. The implications for hydrolysis of oxides of nitrogen on surfaces in the atmosphere are discussed.
Tsivion, E. ; Gerber, B. R. Lifetimes of compounds made of noble-gas atoms with water.
CHEMICAL PHYSICS LETTERS 2009,
482, 30-33.
AbstractThe kinetic stability of the HXeOH and HXeOXeH molecules, chemically bound compounds made of Xe atoms and water, is studied by multi-reference ab initio methods. The decomposition paths, the transition states and the rates of dissociation as a function of temperature, are calculated. HXeOH and HXeOXeH are found to be protected by an energy barriers of 0.59 and 0.4 eV, respectively. Applying transition state theory, HXeOH and HXeOXeH have intrinsic half-lives of 1 h at 170 and 120 K, respectively. Implications of the results for the kinetic stability of these species are discussed. (C) 2009 Elsevier B. V. All rights reserved.
Domanskaya, A. ; Kobzarenko, A. V. ; Tsivion, E. ; Khriachtchev, L. ; Feldman, V. I. ; Gerber, B. R. ; Rasanen, M. Matrix-isolation and ab initio study of HXeCCH complexed with acetylene.
CHEMICAL PHYSICS LETTERS 2009,
481, 83-87.
AbstractThe HXeCCH center dot center dot center dot H(2)C(2) complex has been characterized by IR spectroscopy in a xenon matrix and ab initio calculations. This species exhibits a blue shift of the H-Xe stretching mode (19-28 cm(-1)) in comparison with the HXeCCH monomer, which indicates stabilization of the H-Xe bond upon complexation. The complex results from annealing-induced diffusion of acetylene molecules above 50 K to isolated HXeCCH formed at lower temperature. In addition, a weak absorption with a blue shift of +51 cm(-1) was tentatively assigned to the HXeCCH complex with two acetylene molecules. These experimental observations are supported by ab initio calculations. (C) 2009 Elsevier B.V. All rights reserved.
Miller, Y. ; Thomas, J. L. ; Kemp, D. D. ; Finlayson-Pitts, B. J. ; Gordon, M. S. ; Tobias, D. J. ; Gerber, B. R. Structure of Large Nitrate-Water Clusters at Ambient Temperatures: Simulations with Effective Fragment Potentials and Force Fields with Implications for Atmospheric Chemistry.
JOURNAL OF PHYSICAL CHEMISTRY A 2009,
113, 12805-12814.
AbstractStructural properties of large NO(3)(-)center dot(H(2)O)(n) (n = 15-500) clusters are studied by Monte Carlo simulations using effective fragment potentials (EFPs) and by classical molecular dynamics simulations using a polarizable empirical force field. The simulation results are analyzed with a focus on the description of hydrogen bonding and solvation in the clusters. In addition, a comparison between the electronic structure based EFP and the classical force field description of the 32 water cluster system is presented. The EFP simulations, which focused on the cases of n = 15 and 32, show an internal, fully solvated structure and a ``surface adsorbed'' structure for the 32 water cluster at 300 K, with the latter configuration being more probable. The internal solvated structure and the ``surface adsorbed'' structure differ considerably in their hydrogen bonding coordination numbers. The force field based simulations agree qualitatively with these results, and the local geometry of NO(3)(-) and solvation at the surface-adsorbed site in the force field simulations are similar to those predicted using EFPs. Differences and similarities between the description of hydrogen bonding of the anion in the two approaches are discussed. Extensive classical force field based simulations at 250 K predict that long time scale stability of ``internal'' NO(3)(-), which is characteristic of extended bulk aqueous interfaces, emerges only for n > 300. Ab initio Moller-Plesset perturbation theory is used to test the geometries of selected surface and interior anions for n = 32, and the results are compared to the EFP and MD simulations. Qualitatively, all approaches agree that surface structures are preferred over the interior structures for clusters of this size. The relatively large aqueous clusters of NO(3)(-) studied here are of comparable size to clusters that lead to new particle formation in air. Nitrate ions on the Surface of such clusters may have significantly different photochemistry than the internal species. The possible implications of surface-adsorbed nitrate ions for atmospheric chemistry are discussed.