Local mechanical cues can affect crucial fate decisions of living cells. Transepithelial stress has been discussed in the context of epithelial monolayers, but the lack of appropriate experimental systems leads current studies to approximate it simply as an in-plane stress. To evaluate possible contribution of force vectors acting in other directions, double epithelium in a 3D-printed "GeminiChip" containing a sessile and a pendant channel is reconstituted. Intriguingly, the sessile epithelia is prone to apoptotic cell extrusion upon crowding, whereas the pendant counterpart favors live cell delamination. Transcriptome analyses show upregulation of RhoA, BMP2, and hypoxia-signaling genes in the pendant epithelium, consistent with the onset of an epithelial-mesenchymal transition program. HepG2 microtumor spheroids also display differential spreading patterns in the sessile and pendant configuration. Using this multilayered GeminiChip, these results uncover a progressive yet critical role of perpendicular force vectors in collective cell behaviors and point at fundamental importance of these forces in the biology of cancer.
Mixing of polystyrene resin in solid phase synthesis is performed using shaking or gentle agitation of the reaction vessel to avoid breaking the brittle beads. These mixing strategies result in poor diffusion to and into the beads. Using a large excess of reagents is the common way to compensate for these deficiencies. We used fast overhead stirring for performing coupling reactions on the solid support. We show that fast overhead stirring enhances the efficiency of amide bond formation on solid support compared to the state-of-the-art mixing method while preserving the integrity of the beads. We found that fast over overhead stirring minimizes the effect of decomposition of the activated species by increasing the diffusion dependent coupling reaction. This allows to decrease the excess of reagents used for the multi-step synthesis of peptides, thus, provides greener and more sustainable alternative for peptide synthesis on solid support.
Online Social Networking Sites (SNSs) are immensely popular, especially among adolescents. Activity on these sites leaves digital footprints, which may be used to study online behavioral correlates of adolescent psychological distress and to, ultimately, improve detection and intervention efforts. In the present work, we explore the digital footprints of adolescent depression, social rejection, and victimization of bullying on Facebook. Two consecutive studies were conducted among Israeli adolescents (N = 86 and N = 162). We collected a range of Facebook activity features, as well as self-report measurements of depression, social rejection, and victimization of bullying. Findings from Study 1 demonstrate that explicit distress references in Facebook postings (e.g., "Life sucks, I want to die") predict depression among adolescents, but that such explicit distress references are rare. In Study 2, we applied a bottom-up research methodology along with the previous top-down, theory driven approach. Study 2 demonstrates that less explicit features of Facebook behavior predict social rejection and victimization of bullying. These features include 'posts by others', 'check-ins', 'gothic and dark content', 'other people in pictures', and 'positive attitudes towards others'. The potential, promises and limitations of using digital Facebook footprints for the detection of adolescent psychological distress are discussed.
Peptides are very common recognition entities that are usually attached to surfaces using multistep processes. These processes require modification of the native peptides and of the substrates. Using functional groups in native peptides for their assembly on surfaces without affecting their biological activity can facilitate the preparation of biosensors. Herein, we present a simple single-step formation of native oxytocin monolayer on gold surface. These surfaces were characterized by atomic force spectroscopy, spectroscopic ellipsometry, and X-ray photoelectron spectroscopy. We took advantage of the native disulfide bridge of the oxytocin for anchoring the peptide to the Au surface, while preserving the metal-ion binding properties. Self-assembled oxytocin monolayer was used by electrochemical impedance spectroscopy for metal-ion sensing leading to subnanomolar sensitivities for zinc or copper ions.
Peptides are very common recognition entities that are usually attached to surfaces using multistep processes. These processes require modification of the native peptides and of the substrates. Using functional groups in native peptides for their assembly on surfaces without affecting their biological activity can facilitate the preparation of biosensors. Herein, we present a simple single-step formation of native oxytocin monolayer on gold surface. These surfaces were characterized by atomic force spectroscopy, spectroscopic ellipsometry, and X-ray photoelectron spectroscopy. We took advantage of the native disulfide bridge of the oxytocin for anchoring the peptide to the Au surface, while preserving the metal-ion binding properties. Self-assembled oxytocin monolayer was used by electrochemical impedance spectroscopy for metal-ion sensing leading to subnanomolar sensitivities for zinc or copper ions.
Peptides are very common recognition entities that are usually attached to surfaces using multistep processes. These processes require modification of the native peptides and of the substrates. Using functional groups in native peptides for their assembly on surfaces without affecting their biological activity can facilitate the preparation of biosensors. Herein, we present a simple single-step formation of native oxytocin monolayer on gold surface. These surfaces were characterized by atomic force spectroscopy, spectroscopic ellipsometry, and X-ray photoelectron spectroscopy. We took advantage of the native disulfide bridge of the oxytocin for anchoring the peptide to the Au surface, while preserving the metal-ion binding properties. Self-assembled oxytocin monolayer was used by electrochemical impedance spectroscopy for metal-ion sensing leading to subnanomolar sensitivities for zinc or copper ions.
Aerogel objects inspired by plant cell wall components and structures were fabricated using extrusion-based 3D printing at cryogenic temperatures. The printing process combines 3D printing with the alignment of rod-shaped nanoparticles through the freeze-casting of aqueous inks. We have named this method direct cryo writing (DCW) as it encompasses in a single processing step traditional directional freeze casting and the spatial fidelity of 3D printing. DCW is demonstrated with inks that are composed of an aqueous mixture of cellulose nanocrystals (CNCs) and xyloglucan (XG), which are the major building blocks of plant cell walls. Rapid fixation of the inks is achieved through tailored rheological properties and controlled directional freezing. Morphological evaluation revealed the role of ice crystal growth in the alignment of CNCs and XG. The structure of the aerogels changed from organized and tubular to disordered and flakey pores with an increase in XG content. The internal structure of the printed objects mimics the structure of various wood species and can therefore be used to create wood-like structures via additive manufacturing technologies using only renewable wood-based materials.
We studied the direct electron transfer (DET) between glucose and electrogenerated AuCl4- catalysed by glucose oxidase (GOx) and gold nanoparticles (AuNPs) by scanning electrochemical microscopy (SECM). Well-defined AuNPs were prepared and attached onto an insulating surface. Studying the current transients of a gold microelectrode held within a few microns from the surface revealed that the AuNPs interacted with the GOx and were crucial for the DET from the glucose. We investigated very carefully the effect of pH and the size of the AuNPs on electron transfer. AuNPs of 16, 40 and 80 nm diameter were applied. The kinetics of electron transfer was analysed by the Michael-Menten kinetic mechanism. Interestingly, we found that the fastest DET was exhibited by the 40 nm AuNPs at pH 3 and 5. At higher pH, electron transfer was better catalysed by the 80 nm AuNPs. This was rationalized by the effect of the pH on the enzymatic structure and the charge of the AuNPs.
Directed-assembly by standing surface acoustic waves (SSAWs) only requires an acoustic contrast between particles and their surrounding medium. It is therefore highly attractive as this requirement is fulfilled by almost all dispersed systems. Previous studies utilizing SSAWs demonstrated mainly reversible microstructure arrangements from nanoparticles. The surface chem. of colloids dramatically influences their tendency to aggregate and sinter; therefore, it should be possible to form permanent microstructures with intimate contact between nanoparticles by controlling this property. Dispersed silver nanoparticles in a microfluidic channel were exposed to SSAWs and reversibly accumulated at the pressure nodes. We show that addition of chloride ions that remove the polyacrylic capping of the nanoparticles trigger their sintering and the formation of stable conducting silver microstructures. Moreover, if the destabilizing ions are added prior to nanoparticle assembly while continuously streaming the dispersion through the acoustic aperture, the induced aggregation leads to formation of significantly thinner microstructures, which are (for the first time) unlimited in length by the acoustic apparatus This new approach overcomes the discrepancy between the need for organic dispersants to prevent unwanted aggregation in the dispersion, and the end product's requirement for intimate contact between the colloidal particles.
The cellular functions of arrestins are determined in part by the pattern of phosphorylation on the G protein-coupled receptors (GPCRs) to which arrestins bind. Despite high-resolution structural data of arrestins bound to phosphorylated receptor C-termini, the functional role of each phosphorylation site remains obscure. Here, we employed a library of synthetic phosphopeptide analogues of the GPCR rhodopsin C-terminus and determined the ability of these peptides to bind and activate arrestins using a variety of biochemical and biophysical methods. We further characterized how these peptides modulated the conformation of arrestin-1 by nuclear magnetic resonance (NMR). Our results indicate that the particular phosphorylation sites can be grouped into different functional classes: ‘key sites’ required for arrestin binding and activation, an ‘inhibitory site’ that abrogates arrestin binding, and ‘modulator sites’ that influence the global conformation of arrestin. These functional motifs allow a better understanding of how different GPCR phosphorylation patterns might control how arrestin functions in the cell.
This monograph deals with spatially dependent nonstationary time series in a way accessible to both time series econometricians wanting to understand spatial econometics, and spatial econometricians lacking a grounding in time series analysis. After charting key concepts in both time series and spatial econometrics, the book discusses how the spatial connectivity matrix can be estimated using spatial panel data instead of assuming it to be exogenously fixed. This is followed by a discussion of spatial nonstationarity in spatial cross-section data, and a full exposition of non-stationarity in both single and multi-equation contexts, including the estimation and simulation of spatial vector autoregression (VAR) models and spatial error correction (ECM) models. The book reviews the literature on panel unit root tests and panel cointegration tests for spatially independent data, and for data that are strongly spatially dependent. It provides for the first time critical values for panel unit root tests and panel cointegration tests when the spatial panel data are weakly or spatially dependent. The volume concludes with a discussion of incorporating strong and weak spatial dependence in non-stationary panel data models. All discussions are accompanied by empirical testing based on a spatial panel data of house prices in Israel.
The selective recognition of nanoparticles (NPs) can be achieved by nanoparticle-imprinted matrices (NAIMs), where NPs are imprinted in a matrix followed by their removal to form voids that can reuptake the original NPs. The recognition depends on supramolecular interactions between the matrix and the shell of the NPs, as well as on the geometrical suitability of the imprinted voids to accommodate the NPs. Here, gold NPs stabilized with citrate (AuNPs-cit) were preadsorbed onto a conductive surface followed by electrografting of p-aryldiazonium salts (ADS) with different functional groups. The thickness of the matrix was carefully controlled by altering the scan number. The AuNPs-cit were removed by electrochemical dissolution. The recognition of the NAIMs was determined by the reuptake of the original AuNPs-cit by the imprinted voids. We found that the recognition efficiency is a function of the thickness of the NAIM layer and is sensitive to the chemical structure of the matrix. Specifically, a subtle change of the functional group of the p-aryldiazonium building block, which was varied from an ether to an ester, significantly affected the recognition of the NPs.
Abstract The origin of the spectral shift from a red- to a green-absorbing form in a cyanobacteriochrome, Slr1393g3, was identified by combined quantum mechanics/molecular mechanics simulations. This protein, related to classical phytochromes, carries the open-chain tetrapyrrole chromophore phycocyanobilin. Our calculations reveal that the effective conjugation length in the chromophore becomes shorter upon conversion from the red to the green form. This is related to the planarity of the entire chromophore. A large distortion was found for the terminal pyrrole rings A and D; however, the D ring contributes more strongly to the photoproduct tuning, despite a larger change in the twist of the A ring. Our findings implicate that the D ring twist can be exploited to regulate the absorption of the photoproduct. Hence, mutations that affect the D ring twist can lead to rational tuning of the photoproduct absorption, allowing the tailoring of cyanobacteriochromes for biotechnological applications such as optogenetics and bioimaging.