Publications

2021
Payvand Arjmand, Ori Katz, Sylvain Gigan, and Marc Guillon. 2021. “Three-dimensional broadband light beam manipulation in forward scattering samples.” Optics Express, 29, 5, Pp. 6563-6581. Publisher's Version
Francesco Marra, Moshe Armon, Ori Adam, Davide Zoccatelli, Osama Gazal, Chaim I Garfinkel, Dorita Rostkier-Edelstein, Uri Dayan, Yehouda Enzel, and Efrat Morin. 2021. “Toward Narrowing Uncertainty in Future Projections of Local Extreme Precipitation.” Geophysical Research Letters, 48, 5, Pp. e2020GL091823. Publisher's Version Abstract
Abstract Projections of extreme precipitation based on modern climate models suffer from large uncertainties. Specifically, unresolved physics and natural variability limit the ability of climate models to provide actionable information on impacts and risks at the regional, watershed and city scales relevant for practical applications. Here, we show that the interaction of precipitating systems with local features can constrain the statistical description of extreme precipitation. These observational constraints can be used to project local extremes of low yearly exceedance probability (e.g., 100-year events) using synoptic-scale information from climate models, which is generally represented more accurately than the local scales, and without requiring climate models to explicitly resolve extremes. The novel approach, demonstrated here over the south-eastern Mediterranean, offers a path for improving the predictability of local statistics of extremes in a changing climate, independent of pending improvements in climate models at regional and local scales.
M. Asido, R.K. Kar, C.N. Kriebel, M. Braun, C. Glaubitz, I. Schapiro, and J. Wachtveitl. 2021. “Transient Near-UV Absorption of the Light-Driven Sodium Pump Krokinobacter eikastus Rhodopsin 2: A Spectroscopic Marker for Retinal Configuration.” Journal of Physical Chemistry Letters, 12, 27, Pp. 6284 - 6291. Publisher's Version
Two pathways and an isotope effect in H3+ formation following double ionization of methanol
Krishnendu Gope, Ester Livshits, Dror M. Bittner, Roi Baer, and Daniel Strasser. 2021. “Two pathways and an isotope effect in H3+ formation following double ionization of methanol.” Natural Sciences, Pp. ntls.10022. Publisher's Version Abstract

The trihydrogen ion has a central role in creating complex molecules in the interstellar medium. Therefore, its formation and destruction mechanisms in high photon energy environments involving organic molecules are drawing significant experimental and theoretical attention. Here, we employ a combination of time-resolved ultrafast extreme-ultraviolet pump and near-infrared probe spectroscopy applied to the deuterated CH3OD methanol molecule. Similar to other double-ionization studies, the isotopic labeling reveals two competing pathways for forming trihydrogen: A) H+3 + COH+ and B) H+3 + HCO+. We validate our high-level ab initio nonadiabatic molecular dynamic simulations by showing that it closely reproduces the essential features of the measured kinetic energy release distribution and branching ratios of the two pathways of the deuterated system. The success of ab initio simulation in describing single photon double-ionization allows for an unprecedented peek into the formation pathways for the undeuterated species, beyond present experimental reach. For this case, we find that the kinetic energy release of pathway B shifts to lower energies by more than 0.6 eV due to a dynamical isotope effect. We also determine the mechanism for trihydrogen formation from excited states of the dication and elucidate the isotope effect’s role in the observed dynamics.

ntls.10022.pdf
d1ma00006c.pdf
S.G. Sokolovski, E.A. Zherebtsov, R.K. Kar, D. Golonka, R. Stabel, N.B. Chichkov, A. Gorodetsky, I. Schapiro, A. Möglich, and E.U. Rafailov. 2021. “Two-photon conversion of a bacterial phytochrome.” Biophysical Journal, 120, 5, Pp. 964 - 974. Publisher's Version
E. Collini, H. Gattuso, R. D. Levine, and F. Remacle. 2021. “Ultrafast fs coherent excitonic dynamics in CdSe quantum dots assemblies addressed and probed by 2D electronic spectroscopy.” Journal of Chemical Physics, 154, 1.
Jayanta Dana, Tal Binyamin, lioz etgar, and Sanford Ruhman. 5/6/2021. “Unusually Strong Biexciton Repulsion Detected in Quantum Confined CsPbBr3 Nanocrystals with Two and Three Pulse Femtosecond Spectroscopy.” ACS Nano, 2021 15 (5), Pp. 9039-9047.
acsnano.1c02123.pdf
Noam Levin, Marta Yebra, and Stuart Phinn. 2021. “Unveiling the Factors Responsible for Australia’s Black Summer Fires of 2019/2020.” Fire, 4, 3, Pp. 58.
Leona Toker. 2021. “Urban Intelligentsia in A Tale of Two Cities.” In Critical Insights: A Tale of Two Cities, ed. Robert C. Evans, Pp. 79–92. Ipswich, MA: Salem House.
Yair Fogel-Dror, Tamir Sheafer, and Shaul R. Shenhav. 2021. “A Weakly Supervised and Deep Learning Method for an Additive Topic Analysis of Large Corpora.” Computational Communication Research, 31, 1, Pp. 29-59. Publisher's Version Abstract

The collaborative effort of theory-driven content analysis can benefit
significantly from the use of topic analysis methods, which allow researchers
to add more categories while developing or testing a theory. This additive
approach enables the reuse of previous efforts of analysis or even the
merging of separate research projects, thereby making these methods
more accessible and increasing the discipline’s ability to create and share
content analysis capabilities. This paper proposes a weakly supervised topic
analysis method that uses both a low-cost unsupervised method to compile
a training set and supervised deep learning as an additive and accurate
text classification method. We test the validity of the method, specifically
its additivity, by comparing the results of the method after adding 200
categories to an initial number of 450. We show that the suggested method
provides a foundation for a low-cost solution for large-scale topic analysis.

Onno Boxma, Offer Kella, and Uri Yechiali. 2021. “Workload distributions in ASIP queueing networks.” Queueing Systems: Theory and Applications, 97, 1-2, Pp. 81-100. Publisher's Version
S.V. Faraone, T. Banaschewski, D. Coghill, Y. Zheng, J. Biederman, M.A. Bellgrove, J.H. Newcorn, M. Gignac, N.M. Al Saud, I. Manor, L.A. Rohde, L. Yang, S. Cortese, D. Almagor, M.A. Stein, T.H. Albatti, H.F. Aljoudi, M.M.J. Alqahtani, P. Asherson, L. Atwoli, B. Bölte, J.K. Buitelaar, C.L. Crunelle, D. Daley, S. Dalsgaard, M. Döpfner, S. Espinet, M. Fitzgerald, B. Franke, M. Gerlach, J. Haavik, C.A. Hartman, C.M. Hartung, S.P. Hinshaw, P.J. Hoekstra, C. Hollis, S.H. Kollins, J.J.S. Kooij, J. Kuntsi, H. Larsson, T. Li, J. Liu, E. Merzon, G. Mattingly, P. Mattos, S. McCarthy, A.Y. Mikami, B.S.G. Molina, J.T. Nigg, D. Purper-Ouakil, O.O. Omigbodun, G.V. Polańczyk, Y. Pollak, A.S. Poulton, R.P. Rajkumar, A. Reding, A. Reif, K. Rubia, J. Rucklidge, M. Romanos, J.A. Ramos-Quiroga, A. Schellekens, A. Scheres, R. Schoeman, J.B. Schweitzer, H. Shah, M.V. Solanto, E. Sonuga-Barke, C. Soutullo, H.C. Steinhausen, J.M. Swanson, A. Thapar, G. Tripp, G. van de Glind, W. van den Brink, S. van der Oord, A. Venter, B. Vitiello, S. Walitza, and Y. Wang. 2021. “The World Federation of ADHD International Consensus Statement: 208 Evidence-based Conclusions about the Disorder.” Neuroscience & Biobehavioral Reviews, 128, Pp. 789-818. Publisher's Version
Gil I. Olgenblum, Liel Sapir, Frank Wien, and Daniel Harries. 2021. “β-Hairpin Miniprotein Stabilization in Trehalose Glass Is Facilitated by an Emergent Compact Non-Native State.” The Journal of Physical Chemistry Letters, 12, 32, Pp. 7659–7664. Publisher's Version Abstract

From stem cell freeze-drying to organ storage, considerable recent efforts have been directed toward the development of new preservation technologies. A prominent protein stabilizing strategy involves vitrification in glassy matrices, most notably those formed of sugars such as the biologically relevant preservative trehalose. Here, we compare the folding thermodynamics of a model miniprotein in solution and in the glassy state of the sugars trehalose and glucose. Using synchrotron radiation circular dichroism (SRCD), we find that the same native structure persists in solution and glass. However, upon transition to the glass, a completely different, conformationally restricted unfolded state replaces the disordered denatured state found in solution, potentially inhibiting misfolding. Concomitantly, a large exothermic contribution is observed in glass, exposing the stabilizing effect of interactions with the sugar matrix on the native state. Our results shed light on the mechanism of protein stabilization in sugar glass and should aid in future preservation technologies.

יואב וקנין, רון שער, יובל גדות, יפתח שלו, עודד ליפשיץ, and ארז בן יוסף. 2021. “על חורבן ירושלים בימי הבית הראשון והשדה המגנטי של כדור הארץ.” מחקרי עיר דוד וירושלים הקדומה, דברי הכנס העשרים ושניים.
sefer_keness-22_he_vaaknin.pdf
2020

We demonstrate an approach that allows taking videos at very high frame-rates of over 100,000 frames per second by exploiting the fast sampling rate of the standard rolling-shutter readout mechanism, common to most conventional sensors, and a compressive-sampling acquisition scheme. Our approach is directly applied to a conventional imaging system by the simple addition of a diffuser to the pupil plane that randomly encodes the entire field-of-view to each camera row, while maintaining diffraction-limited resolution. A short video is reconstructed from a single camera frame via a compressed-sensing reconstruction algorithm, exploiting the inherent sparsity of the imaged scene.

 

Since the 1990s, the Chinese party-state has attempted to teach its youth how to think and speak about the nation through a “patriotic education” campaign waged in schools, the media and on public sites. The reception of these messages by youth of different social backgrounds remains a disputed issue, however. Drawing on a multi-sited field study conducted among rural and urban Han Chinese youth attending different types of schools, this article explores the effects of the patriotic education campaign on youth conceptions of the nation by examining the rhetoric high-school students employ when asked to reflect upon their nation. The study reveals that a majority of youth statements conform to the language and contents of the patriotic education campaign; however, there are significant differences in the discursive stances of urban youth and rural youth and of those attending academic and non-academic, vocational schools. These findings call into question the party-state's current vision of China as a “unified” national collectivity. They highlight the existence of variances in the sense of collective belonging and national identity of Chinese youth, while underscoring the importance of social positioning and perceived life chances in producing these variances.

自上世纪90年代以来,中国共产党一直试图通过在学校、媒体和公共场所开展的“爱国主义教育”活动,教育青少年如何思考和谈论国家。然而,不同社会背景的青年对这些信息的接受仍然是一个有争议的问题。本文对来自不同地域和在不同类型学校就读的城乡汉族青年进行了实地调研,通过考察中学生对国家概念的反思,探讨了 “爱国主义教育” 运动对青年观念的影响。研究表明,大多数青年言论符合 “爱国主义教育” 运动的语言和内容。然而,城市和农村青年以及学术和非学术职业学校学生的态度存在显著差异。这些发现凸显了当代中国青年集体归属感和国家认同感的差异,同时强调了社会地位和所感知的生活机会在产生这些差异方面的重要性。他们进一步质疑党国目前对中国作为 “统一” 的国家集体的看法。

 

Dan Sarni, Takayo Sasaki, Michal Irony Tur-Sinai, Karin Miron, Juan Carlos Rivera-Mulia, Brian Magnuson, Mats Ljungman, David M Gilbert, and Batsheva Kerem. 2020. “3D genome organization contributes to genome instability at fragile sites.” Nat Commun, 11, 1, Pp. 3613. Abstract
Common fragile sites (CFSs) are regions susceptible to replication stress and are hotspots for chromosomal instability in cancer. Several features were suggested to underlie CFS instability, however, these features are prevalent across the genome. Therefore, the molecular mechanisms underlying CFS instability remain unclear. Here, we explore the transcriptional profile and DNA replication timing (RT) under mild replication stress in the context of the 3D genome organization. The results reveal a fragility signature, comprised of a TAD boundary overlapping a highly transcribed large gene with APH-induced RT-delay. This signature enables precise mapping of core fragility regions in known CFSs and identification of novel fragile sites. CFS stability may be compromised by incomplete DNA replication and repair in TAD boundaries core fragility regions leading to genomic instability. The identified fragility signature will allow for a more comprehensive mapping of CFSs and pave the way for investigating mechanisms promoting genomic instability in cancer.
Chengzhi Zhou, Dan Li, Yutong Tan, Yujie Ke, Shancheng Wang, Yang Zhou, Guowei Liu, Shaofan Wu, Jinqing Peng, Anran Li, Shuzhou Li, Siew Hua Chan, Shlomo Magdassi, and Yi Long. 2020. “3D Printed Smart Windows for Adaptive Solar Modulations.” Advanced Optical Materials, 8, 11, Pp. 2000013 - 2000013. Publisher's Version Abstract
Vanadium dioxide (VO2) based thermochromic smart window is considered as the most promising approach for economizing building energy consumption. However, the high phase transition temperature (τc), low luminous transmission (Tlum), and solar modulation (ΔTsol) impose an invertible challenge for commercialization. Currently, smart window research surprisingly assumes that the sunlight radiates in one direction which is obviously not valid as most regions receive solar radiation at various angles in different seasons. For the first time, solar elevation angle is considered and 3D printing technology is employed to fabricate tilted microstructures for modulating solar transmission dynamically. To maximize energy-saving performance, the architecture of the structures (tilt, thickness, spacing, and width) and tungsten (W) doped VO2 can be custom-designed according to the solar elevation angle variation at the midday between seasons and tackle the issue of compromised Tlum and ΔTsol with W-doping. The energy consumption simulations in different cities prove the efficiency of such dynamic modulation. This first attempt to adaptively regulate the solar modulation by considering the solar elevation angle together with one of the best reported thermochromic properties (τc = 40 °C, Tlum(average) = 40.8%, ΔTsol = 23.3%) may open a new era of real-world-scenario smart window research.

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