Quantum Chemistry

In Press
Convergence Analysis of the Stochastic Resolution of Identity: Comparing Hutchinson to Hutch++ for the Second-Order Green's Function
Mejía, L. ; Sharma, S. ; Baer, R. ; Chan, G. K. - L. ; Rabani, E. Convergence Analysis of the Stochastic Resolution of Identity: Comparing Hutchinson to Hutch++ for the Second-Order Green's Function. Journal of Chemical Physics In Press. Publisher's VersionAbstract

Stochastic orbital techniques offer reduced computational scaling and memory requirements to describe ground and excited states at the cost of introducing controlled statistical errors. Such techniques often rely on two basic operations, stochastic trace estimation and stochastic resolution of identity, both of which lead to statistical errors that scale with the number of stochastic realizations (\$N\_\\textbackslashxi\\$) as \$\textbackslashsqrt\N\_\\textbackslashxi\ˆ\-1\\\$. Reducing the statistical errors without significantly increasing \$N\_\\textbackslashxi\\$ has been challenging and is central to the development of efficient and accurate stochastic algorithms. In this work, we build upon recent progress made to improve stochastic trace estimation based on the ubiquitous Hutchinson's algorithm and propose a two-step approach for the stochastic resolution of identity, in the spirit of the Hutch++ method. Our approach is based on employing a randomized low-rank approximation followed by a residual calculation, resulting in statistical errors that scale much better than \$\textbackslashsqrt\N\_\\textbackslashxi\ˆ\-1\\\$. We implement the approach within the second-order Born approximation for the self-energy in the computation of neutral excitations and discuss three different low-rank approximations for the two-body Coulomb integrals. Tests on a series of hydrogen dimer chains with varying lengths demonstrate that the Hutch++-like approximations are computationally more efficient than both deterministic and purely stochastic (Hutchinson) approaches for low error thresholds and intermediate system sizes. Notably, for arbitrarily large systems, the Hutchinson-like approximation outperforms both deterministic and Hutch++-like methods.

Submitted
Compact Gaussian basis sets for stochastic DFT calculations
Fabian, M. D. ; Rabani, E. ; Baer, R. Compact Gaussian basis sets for stochastic DFT calculations, Submitted. basissetpaper.pdf
2024
The Effect of the Capping Agents of Nanoparticles on Their Redox Potential
Savchenko, P. ; Zelikovich, D. ; Elgavi Sinai, H. ; Baer, R. ; Mandler, D. The Effect of the Capping Agents of Nanoparticles on Their Redox Potential. J. Am. Chem. Soc. 2024, 146, 22208–22219. Publisher's VersionAbstract

Engineered metallic nanoparticles, which are found in numerous applications, are usually stabilized by organic ligands influencing their interfacial properties. We found that the ligands affect tremendously the electrochemical peak oxidation potentials of the nanoparticles. In this work, identical gold nanoparticles were ligand-exchanged and carefully analyzed to enable a precise and highly reproducible comparison. The peak potential difference between gold nanoparticles stabilized by various ligands, such as 2and 4-mercaptobenzoic acid, can be as high as 71 mV, which is substantial in energetic terms. A detailed study supported by density functional theory (DFT) calculations aimed to determine the source of this interesting effect. The DFT simulations of the ligand adsorption modes on Au surfaces were used to calculate the redox potentials through the thermodynamic cycle method. The DFT results of the peak potential shift were in good agreement with the experimental results for a few ligands, but showed some discrepancy, which was attributed to kinetic effects. The kinetic rate constant of the oxidation of Au nanoparticles stabilized by 4mercaptobenzoic acid was found to be twice as large as that of the Au nanoparticles stabilized by citrate, as calculated from Laviron’s theory and the Tafel equation. Finally, these findings could be applied to some novel applications such as determining the distribution of nanoparticle population in a dispersion as well as monitoring the ligand exchange between nanoparticles.

Symmetry-breaking dynamics of a photoionized carbon dioxide dimer
Livshits, E. ; Bittner, D. M. ; Trost, F. ; Meister, S. ; Lindenblatt, H. ; Treusch, R. ; Gope, K. ; Pfeifer, T. ; Baer, R. ; Moshammer, R. ; et al. Symmetry-breaking dynamics of a photoionized carbon dioxide dimer. Nat Commun 2024, 15, 6322. Publisher's Version
Revisiting the benzene excimer using [2, 2] paracyclophane model system: Experiment and theory
Haggag, O. S. ; Baer, R. ; Ruhman, S. ; Krylov, A. Revisiting the benzene excimer using [2, 2] paracyclophane model system: Experiment and theory. J Chem Phys 2024, 160, 124111. Publisher's VersionAbstract

We report high-level calculations of the excited states of [2,2]-paracyclophane (PCP), which was recently investigated experimentally by ultrafast pump-probe experiments on oriented single crystals [Haggag et al., ChemPhotoChem 6 e202200181 (2022)]. PCP, in which the orientation of the two benzene rings and their range of motion are constrained, serves as a model for studying benzene exciplex formation. The character of the excimer state and the state responsible for the brightest transition are similar to those in benzene dimer. The constrained structure of PCP allows one to focus on the most important degree of freedom, the inter-ring distance. The calculations explain the main features of the transient absorption spectral evolution. This brightest transition of the excimer is polarized along the inter-fragment axis. The absorption of light polarized in the plane of the rings reveals the presence of other absorbing states of Rydberg character, with much weaker intensities. We also report new transient absorption data obtained by a broadband 8 fs pump, which time-resolve strong modulations of the excimer absorption. The combination of theory and experiment provides a detailed picture of the evolution of the electronic structure of the PCP excimer in the course of a single molecular vibration.

2022
An “inverse” harpoon mechanism
Gope, K. ; Livshits, E. ; Bittner, D. M. ; Baer, R. ; Strasser, D. An “inverse” harpoon mechanism. Science Advances 2022, 8 eabq8084. Publisher's VersionAbstract

Electron-transfer reactions are ubiquitous in chemistry and biology. The electrons quantum nature allows its transfer across long distances. In the well-known harpoon mechanism, electron-transfer results in Coulombic attraction between initially neutral reactants that leads to dramatic increase in the reaction rate. Here we present a different mechanism, in which electron-transfer from a neutral reactant to a multiply charged cation results in strong repulsion that encodes the electron-transfer distance in the kinetic energy release. 3D coincidence-imaging allows to identify such “inverse” harpoon products, predicted by non adiabatic molecular dynamics simulations to occur between H2 and HCOH2+ following double-ionization of isolated methanol molecules. Detailed comparison of measured and simulated data indicates that while the relative probability of long-range electron-transfer events is correctly predicted, theory overestimates the electron-transfer distance.

Sequential and concerted C-C and C-O bond dissociation in the Coulomb explosion of 2-propanol
Bittner, D. ; Gope, K. ; Livshits, E. ; Baer, R. ; Strasser, D. Sequential and concerted C-C and C-O bond dissociation in the Coulomb explosion of 2-propanol. Journal of Chemical Physics 2022, 157, 074309. Publisher's Version
Linear Weak Scalability of Density Functional Theory Calculations without Imposing Electron Localization
Fabian, M. D. ; Shpiro, B. ; Baer, R. Linear Weak Scalability of Density Functional Theory Calculations without Imposing Electron Localization. J. Chem. Theory Comput. 2022, acs.jctc.1c00829. Publisher's VersionAbstract

Linear scaling density functional theory (DFT) approaches to the electronic structure of materials are often based on the tendency of electrons to localize in large atomic and molecular systems. However, in many cases of actual interest, such as semiconductor nanocrystals, system sizes can reach a substantial extension before significant electron localization sets in, causing a considerable deviation from linear scaling. Herein, we address this class of systems by developing a massively parallel DFT approach which does not rely on electron localization and is formally quadratic scaling yet enables highly efficient linear wall-time complexity in the weak scalability regime. The method extends from the stochastic DFT approach described in Fabian et al. (WIRES: Comp. Mol. Sci. 2019, e1412) but is entirely deterministic. It uses standard quantum chemical atomcentered Gaussian basis sets to represent the electronic wave functions combined with Cartesian real-space grids for some operators and enables a fast solver for the Poisson equation. Our main conclusion is that when a processor-abundant high-performance computing (HPC) infrastructure is available, this type of approach has the potential to allow the study of large systems in regimes where quantum confinement or electron delocalization prevents linear scaling.

Stochastic Vector Techniques in Ground-State Electronic Structure
Baer, R. ; Neuhauser, D. ; Rabani, E. Stochastic Vector Techniques in Ground-State Electronic Structure. Annu. Rev. Phys. Chem. 2022, 73, annurev–physchem–090519–045916. Publisher's VersionAbstract

We review a suite of stochastic vector computational approaches for studying the electronic structure of extended condensed matter systems. These techniques help reduce algorithmic complexity, facilitate efficient parallelization, simplify computational tasks, accelerate calculations, and diminish memory requirements. While their scope is vast, we limit our study to ground-state and finite temperature density functional theory (DFT) and second-order perturbation theory. More advanced topics, such as quasiparticle (charge) and optical (neutral) excitations and higher-order processes, are covered elsewhere. We start by explaining how to use stochastic vectors in computations, characterizing the associated statistical errors. Next, we show how to estimate the electron density in DFT and discuss highly effective techniques to reduce statistical errors. Finally, we review the use of stochastic vector techniques for calculating correlation energies within the secondorder Møller-Plesset perturbation theory and its finite temperature variational form. Example calculation results are presented and used to demonstrate the efficacy of the methods.

High frequency limit of spectroscopy
Nazarov, V. U. ; Baer, R. High frequency limit of spectroscopy. Journal of Chemical Physics 2022, 157, 084112.Abstract

We consider an arbitrary quantum mechanical system, initially in its ground-state, exposed to a time-dependent electromagnetic pulse with a carrier frequency ω0 and a slowly varying envelope of finite duration. By working out a solution to the time-dependent Schrödinger equation in the high-ω0 limit, we find that, to the leading order in ω−10, a perfect self-cancellation of the system’s linear response occurs as the pulse switches off. Surprisingly, the system’s observables are, nonetheless, describable in terms of a combination of its linear density response function and nonlinear functions of the electric field. An analysis of a jellium slab and jellium sphere models reveals a very high surface sensitivity of the considered setup, producing a richer excitation spectrum than accessible within the conventional linear response regime. On this basis, we propose a new spectroscopic technique, which we provisionally name the Nonlinear High-Frequency Pulsed Spectroscopy (NLHFPS). Combining the advantages of the extraordinary surface sensitivity, the absence of constraints by the traditional dipole selection rules, and the clarity of theoretical interpretation utilizing the linear response time-dependent density functional theory, NLHFPS has a potential to evolve into a powerful characterization method for nanoscience and nanotechnology

2020
Time-resolving the ultrafast H2 roaming chemistry and H3+ formation using extreme-ultraviolet pulses
Livshits, E. ; Luzon, I. ; Gope, K. ; Baer, R. ; Strasser, D. Time-resolving the ultrafast H2 roaming chemistry and H3+ formation using extreme-ultraviolet pulses. Communications Chemistry 2020, 3 49. Publisher's Version livshits2020time.pdf
Dopant levels in large nanocrystals using stochastic optimally tuned range-separated hybrid density functional theory
Lee, A. J. ; Chen, M. ; Li, W. ; Neuhauser, D. ; Baer, R. ; Rabani, E. Dopant levels in large nanocrystals using stochastic optimally tuned range-separated hybrid density functional theory. Physical Review B 2020, 102, 035112. Publisher's Version lee2020dopant.pdf
Range-separated stochastic resolution of identity: Formulation and application to second-order Green’s function theory
Dou, W. ; Chen, M. ; Takeshita, T. Y. ; Baer, R. ; Neuhauser, D. ; Rabani, E. Range-separated stochastic resolution of identity: Formulation and application to second-order Green’s function theory. The Journal of Chemical Physics 2020, 153, 074113. Publisher's VersionAbstract

We develop a range-separated stochastic resolution of identity (RS-SRI) approach for the four-index electron repulsion integrals, where the larger terms (above a predefined threshold) are treated using a deterministic RI and the remaining terms are treated using a SRI. The approach is implemented within a second-order Green’s function formalism with an improved O(N3) scaling with the size of the basis set, N. Moreover, the RS approach greatly reduces the statistical error compared to the full stochastic version [T. Y. Takeshita et al., J. Chem. Phys. 151, 044114 (2019)], resulting in computational speedups of ground and excited state energies of nearly two orders of magnitude, as demonstrated for hydrogen dimer chains and water clusters.

dou2020range.pdf
2019
Energy window stochastic density functional theory
Chen, M. ; Baer, R. ; Neuhauser, D. ; Rabani, E. Energy window stochastic density functional theory. The Journal of Chemical Physics 2019, 151, 114116. Publisher's Version chen2019energy.pdf
Stochastic Resolution of Identity for Real-Time Second-Order Green’s Function: Ionization Potential and Quasi-Particle Spectrum
Dou, W. ; Takeshita, T. Y. ; Chen, M. ; Baer, R. ; Neuhauser, D. ; Rabani, E. Stochastic Resolution of Identity for Real-Time Second-Order Green’s Function: Ionization Potential and Quasi-Particle Spectrum. Journal of Chemical Theory and Computation 2019. Publisher's VersionAbstract

We develop a stochastic resolution of identity approach to the real-time second-order Green’s function (real-time sRI-GF2) theory, extending our recent work for imaginary-time Matsubara Green’s function [Takeshita et al. J. Chem. Phys. 2019, 151, 044114]. The approach provides a framework to obtain the quasi-particle spectra across a wide range of frequencies and predicts ionization potentials and electron affinities. To assess the accuracy of the real-time sRI-GF2, we study a series of molecules and compare our results to experiments as well as to a many-body perturbation approach based on the GW approximation, where we find that the real-time sRI-GF2 is as accurate as self-consistent GW. The stochastic formulation reduces the formal computatinal scaling from O(Ne5) down to O(Ne3) where Ne is the number of electrons. This is illustrated for a chain of hydrogen dimers, where we observe a slightly lower than cubic scaling for systems containing up to Ne ≈ 1000 electrons.

dou2019stochastic.pdf
Transition to metallization in warm dense helium-hydrogen mixtures using stochastic density functional theory within the Kubo-Greenwood formalism
Cytter, Y. ; Rabani, E. ; Neuhauser, D. ; Preising, M. ; Redmer, R. ; Baer, R. Transition to metallization in warm dense helium-hydrogen mixtures using stochastic density functional theory within the Kubo-Greenwood formalism. Physical Review B 2019, 100. Publisher's VersionAbstract

Abstract The Kubo-Greenwood (KG) formula is often used in conjunction with Kohn-Sham (KS) density functional theory (DFT) to compute the optical conductivity, particularly for warm dense mater. For applying the KG formula, all KS eigenstates and eigenvalues up to an energy cutoff are required and thus the approach becomes expensive, especially for high temperatures and large systems, scaling cubically with both system size and temperature. Here, we develop an approach to calculate the KS conductivity within the stochastic DFT (sDFT) framework, which requires knowledge only of the KS Hamiltonian but not its eigenstates and values. We show that the computational effort associated with the method scales linearly with system size and reduces in proportion to the temperature unlike the cubic increase with traditional deterministic approaches. In addition, we find that the method allows an accurate description of the entire spectrum, including the high-frequency range, unlike the deterministic method which is compelled to introduce a high-frequency cut-off due to memory and computational time constraints. We apply the method to helium-hydrogen mixtures in the warm dense matter regime at temperatures of \textbackslashsim60\textbackslashtext\kK\ and find that the system displays two conductivity phases, where a transition from non-metal to metal occurs when hydrogen atoms constitute \textbackslashsim0.3 of the total atoms in the system.

cytter2019transition.pdf
Quantum Monte Carlo assessment of density functionals for π-electron molecules: ethylene and bifuran
Ospadov, E. ; Rothstein, S. M. ; Baer, R. Quantum Monte Carlo assessment of density functionals for π-electron molecules: ethylene and bifuran. Molecular Physics 2019, 117, 2241–2250. Publisher's VersionAbstract

We perform all-electron, pure-sampling quantum Monte Carlo (QMC) calculations on ethylene and bifuran molecules. The orbitals used for importance sampling with a single Slater determinant are generated from Hartree-Fock and density functional theory (DFT). Their fixed-node energy provides an upper bound to the exact energy. The best performing density functionals for ethylene are BP86 and M06, which account for 99% of the electron correlation energy. Sampling from the π-electron distribution with these orbitals yields a quadrupole moment comparable to coupled cluster CCSD(T) calculations. However, these, and all other density functionals, fail to agree with CCSD(T) while sampling from electron density in the plane of the molecule. For bifuran, as well as ethylene, a correlation is seen between the fixed-node energy and deviance of the QMC quadrupole moment estimates from those calculated by DFT. This suggests that proximity of DFT and QMC densities correlates with the quality of the exchange nodes of the DFT wave function for both systems.

ospadov2019quantum.pdf
Making Sense of Coulomb Explosion Imaging
Luzon, I. ; Livshits, E. ; Gope, K. ; Baer, R. ; Strasser, D. Making Sense of Coulomb Explosion Imaging. J. Phys. Chem. Lett. 2019, 10, 1361–1367. Publisher's VersionAbstract

A multifaceted agreement between ab initio theoretical predictions and experimental measurements, including branching ratios, channel-specific kinetic energy release, and three-body momentum correlation spectra, leads to the identification of new mechanisms in Coulomb-explosion (CE) induced two- and three-body breakup processes in methanol. These identified mechanisms include direct nonadiabatic Coulomb explosion responsible for CO bond-breaking, a long-range “ inverse harpooning” dominating the production of H2+ + HCOH+, a transient proton migration leading to surprising energy partitioning in three-body fragmentation and other complex dynamics forming products such as H2O+ and H3+. These mechanisms provide general concepts that should be useful for analyzing future time-resolved Coulomb explosion imaging of methanol as well as other molecular systems. These advances are enabled by a combination of recently developed experimental and computational techniques, using weak ultrafast EUV pulses to initiate the CE and a high-level quantum chemistry approach to follow the resulting field-free nonadiabatic molecular dynamics.

luzon2019making.pdf
2017
Vlček, V. ; Rabani, E. ; Neuhauser, D. ; Baer, R. Stochastic GW calculations for molecules. J. Chem. Theory Comput. 2017, 13, 4997–5003.Abstract

Quasiparticle (QP) excitations are extremely important for understanding and predicting charge transfer and transport in molecules, nanostructures and extended systems. Since density functional theory (DFT) within Kohn-Sham (KS) formulation does not provide reliable QP energies, a many-body perturbation technique within the GW approximation are essential. The steep computational scaling of GW prohibits its use in extended, open boundary, systems with thousands of electrons and more. Recently, a stochastic formulation of GW has been proposed [Phys. Rev. Lett. 113, 076402 (2014)] which scales nearly linearly with the system size, as illustrated for a series of silicon nanocrystals exceeding 3000 electrons. Here, we implement the stochastic GW (sGW) approach to study the ionization potential (IP) of a subset of molecules taken from the "GW 100" benchmark. We show that sGW provides a reliable results in comparison to GW WEST code and to experimental results, numerically establishing its validity. For completeness, we also provide a detailed review of sGW and a summary of the numerical algorithm.

vlcek2017stoch.pdf
Neuhauser, D. ; Baer, R. ; Zgid, D. Stochastic self-consistent second-order Green’s function method for correlation energies of large electronic systems. J. Chem. Theory Comput. 2017, 13, 5396−5403.Abstract

The second-order Matsubara Green’s function method (GF2) is a robust temperature dependent quantum chemistry approach, extending beyond the random-phase approximation. However, till now the scope of GF2 applications was quite limited as they require computer resources which rise steeply with system size. In each step of the self-consistent GF2 calculation there are two parts: the estimation of the self-energy from the previous step’s Green’s function, and updating the Green’s function from the self-energy. The first part formally scales as the fifth power of the system size while the second has a much gentler cubic scaling. Here, we develop a stochastic approach to GF2 (sGF2) which reduces the fifth power scaling of the first step to merely quadratic, leaving the overall sGF2 scaling as cubic. We apply the method to linear hydrogen chains containing up to 1000 electrons, showing that the approach is numerically stable, efficient and accurate. The stochastic errors are very small, of the order of 0.1% or less of the correlation energy for large systems, with only a moderate computational effort. The first iteration of GF2 is an MP2 calculation that is done in linear scaling, hence we obtain an extremely fast stochastic MP2 (sMP2) method as a by-product. While here we consider finite systems with large band gaps where at low temperatures effects are negligible, the sGF2 formalism is temperature dependent and general and can be applied to finite or periodic systems with small gaps at finite temperatures.

neuhauser2017.pdf

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