Research

2005
Neuhauser, D. ; Baer, R. Efficient linear-response method circumventing the exchange-correlation kernel: Theory for molecular conductance under finite bias. The Journal of chemical physics 2005, 123, 204105.Abstract

An iterative approach for calculating the frequency domain linear response of molecular systems within time-dependent density-functional theory is presented. The method completely avoids computing the exchange-correlation kernel which is typically the most expensive step for large systems. In particular, virtual orbitals are not needed. This approach may be useful for treating the response of large systems. We give an outline of the theory and a demonstration on a jellium model of an elliptic gold cluster. A detailed theory is appended discussing the computation of conductance and ac impedance of molecular junctions under bias.

neuhauser2005efficient.pdf
Kurzweil, Y. ; Baer, R. Generic Galilean-invariant exchange-correlation functionals with quantum memory. Phys. Rev. B 2005, 72, 035106.Abstract

Today, most application of time-dependent density functional theory (TDDFT) use adiabatic exchange- correlation (XC) potentials that do not take into account non-local temporal effects. Incorporating such "memory" terms into XC potentials is complicated by the constraint that the derived force and torque densities must integrate to zero at every instance. This requirement can be met by deriving the potentials from an XC action that is Galilean in-variant (GI). We develop a class of simple but flexible forms for an action that respect these constraints. The basic idea is to formulate the action in terms of the Eularian-Lagrangian transformation (ELT) metric tensor, which is itself GI. The general form of the XC potentials in this class is then derived and the linear response limit is derived as well.

kurzweil2005.pdf
Hod, O. ; Rabani, E. ; Baer, R. Magnetoresistance Devices Based on Single Walled Carbon Nanotubes. J. Chem. Phys. 2005, 123, 051103.Abstract

We demonstrate the physical principles for the construction of a nanometer-sized magnetoresistance device based on the Aharonov-Bohm effect [Phys. Rev. 115, 485 (1959)]. The proposed device is made of a short single-walled carbon nanotube (SWCNT) placed on a substrate and coupled to a tip/contacts. We consider conductance due to the motion of electrons along the circumference of the tube (as opposed to the motion parallel to its axis). We find that the circumference conductance is sensitive to magnetic fields threading the SWCNT due to the Aharonov-Bohm effect, and show that by retracting the tip/contacts, so that the coupling to the SWCNT is reduced, very high sensitivity to the threading magnetic field develops. This is due to the formation of a narrow resonance through which the tunneling current flows. Using a bias potential the resonance can be shifted to low magnetic fields, allowing the control of conductance with magnetic fields of the order of 1 T.

hod2005.pdf
Hod, O. ; Rabani, E. ; Baer, R. A Parallel Electromagnetic Molecular Logic Gate. J. Am. Chem. Soc. 2005, 127, 1648. hod2005a.pdf
Jacobi, S. ; Baer, R. Variational grand-canonical electronic structure method for open systems. J. Chem. Phys. 2005, 123, 044112.Abstract

An ab initio method is developed for variational grand-canonical molecular electronic structure of open systems based on the Gibbs–Peierls–Boguliobov inequality. We describe the theory and a practical method for performing the calculations within standard quantum chemistry codes using Gaussian basis sets. The computational effort scales similarly to the ground-state Hartree–Fock method. The quality of the approximation is studied on a hydrogen molecule by comparing to the exact Gibbs free energy, computed using full configuration-interaction calculations. We find the approximation quite accurate, with errors similar to those of the Hartree–Fock method for ground-state zero-temperature calculations. A further demonstration is given of the temperature effects on the bending potential curve for water. Some future directions and applications of the method are discussed. Several appendices give the mathematical and algorithmic details of the method.

jacobi2005.pdf
Baer, R. ; Neuhauser, D. A density functional theory with correct long-range asymptotic behavior. Phys. Rev. Lett. 2005, 94, 043002.Abstract

We derive an exact representation of the exchange-correlation energy within density functional theory (DFT) which spawns a class of approximations leading to correct long-range asymptotic behavior. Using a simple approximation, we develop an electronic structure theory that combines a new local correlation energy (based on Monte Carlo calculations applied to the homogeneous electron gas) and a combination of local and explicit long-ranged exchange. The theory is applied to several first-row atoms and diatomic molecules where encouraging results are obtained: good description of the chemical bond at the same time allowing for bound anions, reasonably accurate affinity energies, and correct polarizability of an elongated hydrogen chain. Further stringent tests of DFT are passed, concerning ionization potential and charge distribution under large bias

baer2005a.pdf
Baer, R. ; Kurzweil, Y. ; Cederbaum, L. S. Time-dependent density functional theory for nonadiabatic processes. Isr. J. Chem. 2005, 45, 161–170.Abstract

Time-dependent density functional theory (TDDFT) is a general and robust method allowing the study of electron dynamics whether induced by nuclear motion or by external fields. We give a brief overview of the theory and some numerical methods together with recent applications stressing the generality and wide applicability of the method. We also discuss recent attempts to extend the present TDDFT by incorporating memory terms into the exchange correlation potentials.

baer2005.pdf
2004
Ryb, I. ; Baer, R. Combinatorial invariants and covariants as tools for conical intersections. J. Chem. Phys. 2004, 121, 10370–10375.Abstract

The combinatorial invariant and covariant are introduced as practical tools for analysis of conical intersections in molecules. The combinatorial invariant is a quantity depending on adiabatic electronic states taken at discrete nuclear configuration points. It is invariant to the phase choice (gauge) of these states. In the limit that the points trace a loop in nuclear configuration space, the value of the invariant approaches the corresponding Berry phase factor. The Berry phase indicates the presence of an odd or even number of conical intersections on surfaces bounded by these loops. Based on the combinatorial invariant, we develop a computationally simple and efficient method for locating conical intersections. The method is robust due to its use of gauge invariant nature. It does not rely on the landscape of intersecting potential energy surfaces nor does it require the computation of nonadiabatic couplings. We generalize the concept to open paths and combinatorial covariants for higher dimensions obtaining a technique for the construction of the gauge-covariant adiabatic-diabatic transformation matrix. This too does not make use of nonadiabatic couplings. The importance of using gauge-covariant expressions is underlined throughout. These techniques can be readily implemented by standard quantum chemistry codes.

ryb2004.pdf
Walter, D. ; Neuhauser, D. ; Baer, R. Quantum interference in polycyclic hydrocarbon molecular wires. Chem. Phys. 2004, 299, 139–145.Abstract

The construction of devices based on molecular components depends upon the development of molecular wires with adaptable current-voltage characteristics. Here, we report that quantum interference effects could lead to substantial differences in conductance in molecular wires which include some simple polycyclic aromatic hydrocarbons (PAHs). For molecular wires containing a single benzene. anthracene or tetracene molecule a large peak appears in the electron transmission probability spectrum at an energy just above the lowest unoccupied orbital (LUMO). For a molecular wire containing a single naphthalene molecule, however, this same peak essentially vanishes. Furthermore, the peak can be re-established by altering the attachment points of the molecular leads to the naphthalene molecule. A breakdown of the individual terms contributing the relevant peak confirms that these results are in fact due to quantum interference effects. (C) 2004 Elsevier B.V. All rights reserved.

walter2004.pdf
Liang, W. Z. ; Baer, R. ; Saravanan, C. ; Shao, Y. ; Bell, A. T. ; Head-Gordon, M. Fast methods for resumming matrix polynomials and Chebyshev matrix polynomials. J. Comput. Phys. 2004, 194, 575–587. liang2004fast.pdf
Kurzweil, Y. ; Baer, R. Time-dependent exchange-correlation current density functionals with memory. J. Chem. Phys. 2004, 121, 8731–8741.Abstract

Most present applications of time-dependent density functional theory use adiabatic functionals, i.e. the effective potential at time t is determined solely by the density at the same time. This paper discusses a method that aims to go beyond this approximation, by incorporating "memory" effects: the potential will depend not only on present behavior but also on the past. In order to ensure the derived potentials are causal, we formulate the action on the Keldysh contour for electrons in electromagnetic fields, from which we derive suitable Kohn-Sham equations. The exchange correlation action is now a functional of the electron density and velocity field. A specific action functional is constructed which is Galilean invariant and yields a causal vector potential term to the Kohn-Sham equations that incorporates causal memory effects. We show explicitly that the exchange-correlation Lorentz force is zero. The potential is consistent with known dynamical properties of the homogeneous electron gas (in the linear response limit).

kurzweil2004.pdf
Hawthorne, M. F. ; Zink, J. I. ; Skelton, J. M. ; Bayer, M. J. ; Liu, C. ; Livshits, E. ; Baer, R. ; Neuhauser, D. Electrical or Photocontrol of the Rotary Motion of a Metallacarborane. Science 2004, 303, 1849–1851.Abstract

Rotary motion around a molecular axis has been controlled by simple electron transfer processes and by photoexcitation. The basis of the motion is intramolecular rotation of a carborane cage ligand (7,8-dicarbollide) around a nickel axle. The Ni(III) metallacarborane structure is a transoid sandwich with two pairs of carbon vertices reflected through a center of symmetry, but that of the Ni(IV) species is cisoid. The interconversion of the two provides the basis for controlled, rotational, oscillatory motion. The energies of the Ni(III) and Ni(IV) species are calculated as a function of the rotation angle.

hawthorne2004.pdf
Hod, O. ; Baer, R. ; Rabani, E. Feasible nanometric magnetoresistance devices. The Journal of Physical Chemistry B 2004, 108, 14807–14810. hod2004.pdf
Kallush, S. ; Band, Y. B. ; Baer, R. Rotational Aspects of short-pulse population transfer in diatomic molecules. Chem. Phys. Lett. 2004, 392, 23.Abstract

A fully-selective population transfer scheme for diatomic molecules using short-duration (

kallush2004.pdf
Jacobi, S. ; Baer, R. The well-tempered auxiliary-field Monte Carlo. The Journal of chemical physics 2004, 120, 43–50.Abstract

The auxiliary-field Monte Carlo (AFMC) is a method for computing ground-state and excited-state energies and other properties of electrons in molecules. For a given basis set, AFMC is an approximation to full-configuration interaction and the accuracy is determined predominantly by an inverse temperature "\beta" parameter. A considerable amount of the dynamical correlation energy is recovered even at small values of \beta. Yet, nondynamical correlation energy is inefficiently treated by AFMC. This is because the statistical error grows with \beta, warranting increasing amount of Monte Carlo sampling. A recently introduced multideterminant variant of AFMC is studied, and the method can be tuned by balancing the sizes of the determinantal space and the \beta parameter with respect to a predefined target accuracy. The well tempered AFMC is considerably more efficient than a naive AFMC. We demonstrate the principles on dissociating hydrogen molecule and torsion of ethylene where we calculate the (unoptimized) torsional barrier and the vertical singlet-triplet

jacobi2004well.pdf
Collepardo-Guevara, R. ; Walter, D. ; Neuhauser, D. ; Baer, R. A Hückel study of the effect of a molecular resonance cavity on the quantum conductance of an alkene wire. Chem. Phys. Lett. 2004, 393, 367–371.Abstract

{We use Huckel theory to examine interference effects on conductance of a wire when a ‘lollypop’ side-chain is bonded to it, acting as a resonance cavity. A clear signature of interference is found at these ballistic conducting systems, stronger in small systems. Gating effects are enhanced by the presence of the loop, where the electronic wavefunctions can experience large changes in phase. Using an ‘interference index’

collepardo-guevara2004.pdf
Baer, R. ; Seideman, T. ; Ilani, S. ; Neuhauser, D. Ab initio study of the alternating current impedance of a molecular junction. J. Chem. Phys. 2004, 120, 3387–3396.Abstract

The small-bias conductance of the C-6 molecule, stretched between two metallic leads, is studied using time-dependent density functional theory within the adiabatic local density approximation. The leads are modeled by jellium slabs, the electronic density and the current density are described on a grid, whereas the core electrons and the highly oscillating valence orbitals are approximated using standard norm-conserving pseudopotentials. The jellium leads are supplemented by a complex absorbing potential that serves to absorb charge reaching the edge of the electrodes and hence mimic irreversible flow into the macroscopic metal. The system is rapidly exposed to a ramp potential directed along the C-6 axis, which gives rise to the onset of charge and current oscillations. As time progresses, a fast redistribution of the molecular charge is observed, which translates into a direct current response. Accompanying the dc signal, alternating current fluctuations of charge and currents within the molecule and the metallic leads are observed. These form the complex impedance of the molecule and are especially strong at the plasmon frequency of the leads and the lowest excitation peak of C-6. We study the molecular conductance in two limits: the strong coupling limit, where the edge atoms of the chain are submerged in the jellium and the weak coupling case, where the carbon atoms and the leads do not overlap spatially. (C) 2004 American Institute of Physics.

baer2004c.pdf
Baer, R. ; Neuhauser, D. ; Weiss, S. Enhanced absorption induced by a metallic nanoshell. Nano Lett. 2004, 4 85–88.Abstract

Nanoshells have been previously shown to have tunable absorption frequencies that are dependent on the ratio of their inner and outer radii. Inspired by this, we ask: can a nanoshell increase the absorption of a small core system embedded within it? A theoretical model is constructed to answer this question. A core, composed of a “jellium” ball of the density of gold is embedded within a jellium nanoshell of nanometric diameter. The shell plasmon frequency is tuned to the core absorption line. A calculation based the time-dependent density functional theory was performed showing a 10 fold increase in core excitation yield.

baer2004a.pdf
Baer, R. ; Neuhauser, D. Real-time linear response for time-dependent density-functional theory. J. Chem. Phys. 2004, 121, 9803–9807.Abstract

We present a linear-response approach for time-dependent density-functional theories using time-adiabatic functionals. The resulting theory can be performed both in the time and in the frequency domain. The derivation considers an impulsive perturbation after which the Kohn-Sham orbitals develop in time autonomously. The equation describing the evolution is not strictly linear in the wave function representation. Only after going into a symplectic real-spinor representation does the linearity make itself explicit. For performing the numerical integration of the resulting equations, yielding the linear response in time, we develop a modified Chebyshev expansion approach. The frequency domain is easily accessible as well by changing the coefficients of the Chebyshev polynomial, yielding the expansion of a formal symplectic Green's operator. (C) 2004 American Institute of Physics.

baer2004b.pdf
Baer, R. ; Siam, N. Real-time study of the adiabatic energy loss in an atomic collision with a metal cluster. The Journal of chemical physics 2004, 121, 6341–6345. baer2004d.pdf

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