Research

2008
Livshits, E. ; Baer, R. A Density Functional Theory for Symmetric Radical Cations from Bonding to Dissociation. J. Phys. Chem. A 2008, 112, 12789–12791. Publisher's VersionAbstract

It has been known for quite some time that approximate density functional (ADF) theories fail disastrously when describing the dissociative symmetric radical cations R2+. By considering this dissociation limit, previous work has shown that Hartree-Fock (HF) theory favors the R+1-R-0 charge distribution, whereas DF approximations favor the R+(0.5)-R+0.5. Yet, general quantum mechanical principles indicate that both these (as well as all intermediate) average charge distributions are asymptotically energy degenerate. Thus, HF and ADF theories mistakenly break the symmetry but in a contradicting way. In this letter, we show how to construct system-dependent long-range corrected (LC) density functionals that can successfully treat this class of molecules, avoiding the spurious symmetry breaking. Examples and comparisons to experimental data is given for R = H, He, and Ne, and it is shown that the new LC theory improves considerably the theoretical description of the R-2(+) bond properties, the long-range form of the asymptotic potential curve, and the atomic polarizability. The broader impact of this finding is discussed as well, and it is argued that the widespread semiempirical approach which advocates treating the LC parameter as a system-independent parameter is in fact inappropriate under general circumstances.

livshits2008.pdf
Hod, O. ; Baer, R. ; Rabani, E. Magnetoresistance of nanoscale molecular devices based on Aharonov-Bohm interferometry. J. Phys. C 2008, 20, 383201.Abstract

Control of conductance in molecular junctions is of key importance in the growing field of molecular electronics. The current in these junctions is often controlled by an electric gate designed to shift conductance peaks into the low bias regime. Magnetic fields, on the other hand, have rarely been used due to the small magnetic flux captured by molecular conductors ( an exception is the Kondo effect in single-molecule transistors). This is in contrast to a related field, electronic transport through mesoscopic devices, where considerable activity with magnetic fields has led to a rich description of transport. The scarcity of experimental activity is due to the belief that significant magnetic response is obtained only when the magnetic flux is of the order of the quantum flux, while attaining such a flux for molecular and nanoscale devices requires unrealistic magnetic fields. Here we review recent theoretical work regarding the essential physical requirements necessary for the construction of nanometer-scale magnetoresistance devices based on an Aharonov-Bohm molecular interferometer. We show that control of the conductance properties using small fractions of a magnetic flux can be achieved by carefully adjusting the lifetime of the conducting electrons through a pre-selected single state that is well separated from other states due to quantum confinement effects. Using a simple analytical model and more elaborate atomistic calculations we demonstrate that magnetic fields which give rise to a magnetic flux comparable to 10(-3) of the quantum flux can be used to switch a class of different molecular and nanometer rings, ranging from quantum corrals, carbon nanotubes and even a molecular ring composed of polyconjugated aromatic materials. The unique characteristics of the magnetic field as a gate is further discussed and demonstrated in two different directions. First, a three-terminal molecular router devices that can function as a parallel logic gate, processing two logic operations simultaneously, is presented. Second, the role of inelastic effects arising from electron-phonon couplings on the magnetoresistance properties is analyzed. We show that a remarkable difference between electric and magnetic gating is also revealed when inelastic effects become significant. The inelastic broadening of response curves to electric gates is replaced by a narrowing of magnetoconductance peaks, thereby enhancing the sensitivity of the device.

hod2006.pdf
Granot, R. S. ; Baer, R. A spline for your saddle. J. Chem. Phys. 2008, 128, 184111–9.Abstract

Pinpointing extrema on a multidimensional hypersurface is an important generic problem with a broad scope of application in statistical mechanics, biophysics, chemical reaction dynamics, and quantum chemistry. Local minima of the hypersurface correspond to metastable structures and are usually the most important points to look for. They are relatively easy to find using standard minimizing algorithms. A considerably more difficult task is the location of saddle points. The saddle points most sought for are those which form the lowest barriers between given minima and are usually required for determining rates of rare events. We formulate a path functional minimum principle for the saddle point. We then develop a cubic spline method for applying this principle and locating the saddle point(s) separating two local minima on a potential hypersurface. A quasi-Newton algorithm is used for minimization. The algorithm does not involve second derivatives of the hypersurface and the number of potential gradients evaluated is usually less than 10% of the number of potential evaluations. We demonstrate the performance of the method on several standard examples and on a concerted exchange mechanism for self-diffusion in diamond. Finally, we show that the method may be used for solving large constrained minimization problems which are relevant for self-consistent field iterations in large systems.

granot2008.pdf
Granot, R. S. ; Baer, R. A tight-binding potential for helium in carbon systems. J. Chem. Phys. 2008, 129, 214102.Abstract

The presence of helium in carbon systems, such as diamonds and fullerenes is of interest for planetary sciences, geophysics, astrophysics, and evolution biology. Such systems typically involve a large number of atoms and require a fast method for assessing the interaction potential and forces. We developed a tight-binding approach, based on density functional calculations, which includes a many-body potential term. This latter term is essential for consolidating the density functional results of helium in bulky diamond and Helium passing through a benzene ring which is important for helium-fullerene applications. The method is simple to apply and exhibits good transferability properties.

Baer, R. ; Rabani, E. Theory of resonance energy transfer involving nanocrystals: The role of high multipoles. J. Chem. Phys. 2008, 128, 184710.Abstract

A theory for the fluorescence resonance energy transfer (FRET) between a pair of semiconducting nanocrystal quantum dots is developed. Two types of donor-acceptor couplings for the FRET rate are described: dipole-dipole (d-d) and the dipole-quadrupole (d-q) couplings. The theory builds on a simple effective mass model that is used to relate the FRET rate to measureable quantities such as the nanocrystal size, fundamental gap, effective mass, exciton radius, and optical permittivity. We discuss the relative contribution to the FRET rate of the different multipole terms, the role of strong to weak confinement limits, and the effects of nanocrystal sizes. (C) 2008 American Institute of Physics.

baer2008a.pdf
Baer, R. On the mapping of time-dependent densities onto potentials in quantum mechanics. J. Chem. Phys. 2008, 128, 044103.Abstract

The mapping of time-dependent densities on potentials in systems of identical quantum mechanical particles is examined. This mapping is of significance ever since Runge and Gross [Phys. Rev. Lett. 52, 997 (1984)] established its uniqueness, forming the theoretical basis for time-dependent density functional theory. Beyond uniqueness there are two important issues: existence, often called v-representability, and stability. We show that v-representability for localized densities in turn-on situations is not assured and we give a simple example of nonexistence. As for stability, we discuss an inversion procedure and by computing its Lyapunov exponents we demonstrate that the mapping is unstable with respect to fluctuations in the initial state. We argue that such instabilities will plague any inversion procedure.

baer2008mapping.pdf
2007
Lopata, K. ; Neuhauser, D. ; Baer, R. Curve crossing and negative refraction in simulations of near-field coupled metallic nanoparticle arrays. J. Chem. Phys. 2007, 127, 154714–8.Abstract

We extend our previous results [R. Baer et al., J. Chem. Phys. 126, 014705 (2007).] to develop a simple theory of localized surface plasmon-polariton (LSPP) dispersion on regular arrays of metal nanoparticles in the weak-field and weak-damping limits. This theory describes the energy-momentum as well as the polarization-momentum properties of LSPP waves, both of which are crucial to plasmonic device design. We then explicitly compute the dispersion relation for isotropic and anisotropic two-dimensional square lattices, and show curve crossings between all three levels as well as negative refraction where the phase and group velocities (refractive indices), or at least their projection along the main axis, have different signs. The curve crossing implies that scattering between the different polarizations, and therefore different velocities, is easy at the curve crossing momenta, so that a quick change in wave packet direction can be achieved. Time-resolved wave packet dynamics simulations demonstrate negative refraction and the easy scattering over nanometer length scales. This paper also gives some computational schemes for future applications, such as a way to include source terms and how to efficiently treat dissipative effects.

lopata2007.pdf
Livshits, E. ; Baer, R. A well-tempered density functional theory of electrons in molecules. Phys. Chem. Chem. Phys. 2007, 9 2932–2941. Publisher's VersionAbstract

This Invited Article reports extensions of a recently developed approach to density functional theory with correct long-range behavior (R. Baer and D. Neuhauser, Phys. Rev. Lett., 2005, 94, 043002). The central quantities are a splitting functional \gamma[n] and a complementary exchange-correlation functional E_\gammaXC[n]. We give a practical method for determining the value of \gamma in molecules, assuming an approximation for E_\gammaXC is given. The resulting theory shows good ability to reproduce the ionization potentials for various molecules. However it is not of sufficient accuracy for forming a satisfactory framework for studying molecular properties. A somewhat different approach is then adopted, which depends on a density-independent \gamma and an additional parameter w eliminating part of the local exchange functional. The values of these two parameters are obtained by best-fitting to experimental atomization energies and bond lengths of the molecules in the G2(1) database. The optimized values are \gamma = 0.5 a_0^-1 and w = 0.1. We then examine the performance of this slightly semi-empirical functional for a variety of molecular properties, comparing to related works and experiment. We show that this approach can be used for describing in a satisfactory manner a broad range of molecular properties, be they static or dynamic. Most satisfactory is the ability to describe valence, Rydberg and inter-molecular charge-transfer excitations.

livshits2007.pdf
Halász, G. J. ; Vibók, Á. ; Baer, R. ; Baer, M. Conical intersections induced by the Renner effect in polyatomic molecules. J. Phys. A: Math. Theor. 2007, 40, F267.Abstract

Characterizing and localizing electronic energy degeneracies is important for describing and controlling electronic energy flow in molecules. We show, using topological phase considerations, that the Renner effect in polyatomic molecules with more than three nuclei is necessarily accompanied by 'satellite' conical intersections. In these intersections the non-adiabatic coupling term is on average half an integer. We present ab initio results on the tetra-atomic radical cation C2H+2 to demonstrate the theory.

halasz2007a.pdf
Jorn, R. ; Livshits, E. ; Baer, R. ; Seideman, T. The Role of Charge Localization in Current-Driven Dynamics. Isr. J. Chem. 2007, 47, 99–104. jorn2007.pdf
Baer, R. ; Lopata, K. ; Neuhauser, D. Properties of phase-coherent energy shuttling on the nanoscale. J. Chem. Phys. 2007, 126, 014705–13.Abstract

Recently, the possibility of transporting electromagnetic energy as local-plasmon-polariton waves along arrays of silver nanoparticles was demonstrated experimentally [S. A. Maier et al., Nat. Mater. 2, 229 (2003)]. It was shown that dipole coupling facilitates phase-coherent excitation waves, which propagate while competing against decoherence effects occurring within each dot. In this article the authors study the ideal coherent shuttling in such a system, leaving decoherence for future investigation. In the weak field limit, the waves obey a Schrödinger equation, to be solved using either time-dependent wave-packet or energy resolved scattering techniques. The authors study some dynamical characteristics of these waves, emphasizing intuition and insight. Scattering from barriers, longitudinal-transverse coupling and acceleration methods are studied in detail. The authors also discuss briefly two-dimensional arrays and a simple decoherence model

baer2007.pdf
2006
Halász, G. J. ; Vibók, Á. ; Baer, R. ; Baer, M. Renner-Teller nonadiabatic coupling terms: An ab-initio study of the HNH molecule, 2006. halasz2006renner.pdf
Kurzweil, Y. ; Baer, R. Quantum memory effects on the dynamics of electrons in gold clusters. Physical Review B (Condensed Matter and Materials Physics) 2006, 73, 075413.Abstract

Electron dynamics in metallic clusters are examined using a time-dependent density functional theory that includes a “memory term,” i.e., attempts to describe temporal nonlocal correlations. Using the Iwamoto, Gross, and Kohn exchange-correlation XC kernel, we construct a translationally invariant memory action from which an XC potential is derived that is translationally covariant and exerts zero net force on the electrons. An efficient and stable numerical method to solve the resulting Kohn-Sham equations is presented. Using this framework, we study memory effects on electron dynamics in spherical jellium gold clusters. We find memory significantly broadens the surface plasmon absorption line, yet considerably less than measured in real gold clusters, attributed to the inadequacy of the jellium model. Memory effects on nonlinear spectroscopy are studied as well: a real-time pump-probe setup is used to study the temporal decay profile of the plasmon, finding a fast decay followed by slower tail; and in high harmonic generation, we show that memory narrows and redshifts emission lines.

kurzweil2006.pdf
Livshits, E. ; Baer, R. Time-dependent density-functional studies of the D2 Coulomb explosion. J. Phys. Chem. A 2006, 110, 8443–8450. Publisher's VersionAbstract

Real-time first principle simulations are presented of the D2 Coulomb explosion dynamics detonated by exposure to very intense few-cycle laser pulse. Three approximate functionals within the time-dependent density functional theory (TDDFT) functionals are examined for describing the electron dynamics, including time-dependent Hartree-Fock theory. Nuclei are treated classically with quantum corrections. The calculated results are sensitive to the underlying electronic structure theory, showing too narrow kinetic energy distribution peaked at too high kinetic energy when compared with recent experimental results (Phys. Rev. Lett. 2003, 91, 093002). Experiment also shows a low energy peak which is not seen in the present calculation. We conclude that while Ehrenfest-adiabatic-TDDFT can qualitatively account for the dynamics, it requires further development, probably beyond the adiabatic approximation, to be quantitative.

livshits2006.pdf
Halász, G. J. ; Vibók, Á. ; Baer, R. ; Baer, M. D matrix analysis of the Renner-Teller effect: an accurate three-state diabatization for NH2. J. Chem. Phys. 2006, 125, 094102. halasz2006c.pdf
Hod, O. ; Baer, R. ; Rabani, E. Inelastic effects in Aharonov-Bohm molecular interferometers. Phys. Rev. Lett. 2006, 97, 266803.Abstract

Inelastic effects arising from electron-phonon coupling in molecular Aharonov-Bohm (AB) interferometers are studied using the nonequilibrium Green's function method. Results for the magnetoconductance are compared for different values of the electron-phonon coupling strength. At low-bias voltages, the coupling to the phonons does not change the lifetime and leads mainly to scattering phase shifts of the conducting electrons. As a result of these dephasing processes, the magnetoconductance of the molecular AB interferometer becomes more sensitive to the threading magnetic flux as the electron-phonon coupling is increased, opposite to the behavior of an electric gate.

hod2006.pdf
Hod, O. ; Rabani, E. ; Baer, R. Magnetoresistance of nanoscale molecular devices. Acc. Chem. Res. 2006, 39, 109–117.Abstract

Affecting the current through a molecular or nanoscale junction is usually done by a combination of bias and gate voltages. Magnetic fields are less studied because nanodevices can capture only low values of the magnetic flux. We review recent work done with the aim of finding the conditions for magnetic fields to significantly affect the conductance of such junctions. The basic idea is to create narrow tunneling resonances through a molecular ring-like structure that are highly sensitive to the magnetic field. We describe a computational method that allows us to examine atomistic models of such systems and discuss several specific examples of plausible systems, such as the quantum corral, carbon nanotubes, and polycyclic aromatic hydrocarbon molecules. A unique property of the magnetic field, namely, its ability to split degenerate levels on the ring, is shown to allow prototypes of interesting new nanoscale devices, such as the three-terminal parallel logic gate.

hod2006a.pdf
Baer, R. ; Neuhauser, D. Theoretical studies of molecular scale near-field electron dynamics. J. Chem. Phys. 2006, 125, 074709–9.Abstract

Near-field scanning microscopy and nonlinear spectroscopy on a molecular scale involve weakly interacting subsystems that dynamically exchange electrons and electromagnetic energy. The theoretical description of such processes requires unified approach to the electron-near-field dynamics. By considering electronic structure and dynamics of two distant clusters or atoms we show that adiabatic local spin-density approximation (ALSDA) fails to describe (even qualitatively) essential details of electron dynamics in weakly interacting systems. A recently developed functional addresses these ailments within a time-dependent setting. With this method we study the spectroscopy of a composite system, namely, two weakly coupled metallic clusters. The near-field (dipole-dipole) coupling and electron transfer display an interesting interplay, producing exponential sensitivity of emission yield to the intercomponent distance.

baer2006d.pdf
Baer, R. ; Livshits, E. ; Neuhauser, D. Avoiding self-repulsion in density functional description of biased molecular junctions. Chem. Phys. 2006, 329, 266–275.Abstract

We examine the effects of self-repulsion on the predictions of charge distribution in biased molecular junctions by the local density functional theory methods. This is done using a functional with explicit long-range exchange term effects [R. Baer, D. Neuhauser, Phys. Rev. Lett. 94 (2005) 043002]. We discuss in detail the new density functional, pointing out some of the remaining difficulties in the theory. We find that in weakly coupled junctions (the typical molecular electronics case) local-density functionals fail to describe correctly the charge distribution in the intermediate bias regime. (c) 2006 Elsevier B.V. All rights reserved.

baer2006c.pdf
2005
Shemesh, D. ; Baer, R. ; Seideman, T. ; Gerber, B. R. Photoionization dynamics of glycine adsorbed on a silicon cluster:“On-the-fly” simulations. The Journal of chemical physics 2005, 122, 184704.Abstract

Dynamics of glycine chemisorbed on the surface of a silicon cluster is studied for a process that involves single-photon ionization, followed by recombination with the electron after a selected time delay. The process is studied by “on-the-fly” molecular dynamics simulations, using the semiempirical parametric method number 3 (PM3) potential energy surface. The system is taken to be in the ground state prior to photoionization, and time delays from 5 to 50 fs before the recombination are considered. The time evolution is computed over 10 ps. The main findings are (1) the positive charge after ionization is initially mostly distributed on the silicon cluster. (2) After ionization the major structural changes are on the silicon cluster. These include Si–Si bond breaking and formation and hydrogen transfer between different silicon atoms. (3) The transient ionization event gives rise to dynamical behavior that depends sensitively on the ion state lifetime. Subsequent to 45 fs evolution in the charged state, the glycine molecule starts to rotate on the silicon cluster. Implications of the results to various processes that are induced by transient transition to a charged state are discussed. These include inelastic tunneling in molecular devices, photochemistry on conducting surfaces, and electron-molecule scattering.

shemesh2005photoionization.pdf

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